top of page
This site was designed with the
.com
website builder. Create your website today.Start Now

  1. Qingsong Xie, Shikui Tu, Guoxing Wang, Yong Lian, and Lei Xu, “Discrete Biorthogonal Wavelet Transform Based Convolutional Neural Network for Atrial Fibrillation Diagnosis from Electrocardiogram,” in Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, IJCAI-20, 2020, pp. 4403–4409, doi: 10.24963/ijcai.2020/607.

  2. Zhihao Xing and Shikui Tu, “A Graph Neural Network Assisted Monte Carlo Tree Search Approach to Traveling Salesman Problem,” IEEE Access, vol. 8, pp. 108418–108428, 2020, doi: 10.1109/ACCESS.2020.3000236.

  3. Wenjing Huang, Shikui Tu, and Lei Xu, “Deep CNN Based Lmser and Strengths of Two Built-In Dualities,” Neural Processing Letters, Sep. 2020, doi: 10.1007/s11063-020-10341-5.

  4. Jinxiong Lv, Shikui Tu, and Lei Xu, “A two-variate phenotype-targeted test for detection of phenotypic biomarkers on breast cancer,” in 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Nov. 2019, pp. 840–845, doi: 10.1109/BIBM47256.2019.8983052. 

  5. Peiying Li, Shikui Tu, and Lei Xu. "GAN Flexible Lmser for Super-resolution." In Proceedings of the 27th ACM International Conference on Multimedia (MM), pp. 756-764. ACM, 2019.

  6. Qingsong Xie, Shikui Tu, Guoxing Wang, Yong Lian and Lei Xu, "Feature Enrichment Based Convolutional Neural Network for Heartbeat Classification from Electrocardiogram," in IEEE Access 2019.  doi: 10.1109/ACCESS.2019.2948857

  7. Yongjie Wang, Lin Zeng, Chao Liang, Rui Zan, Weiping Ji, Zhichang Zhang, Yuxuan Wei, Shikui Tu#, and Yang Dong#. "Integrated analysis of transcriptome-wide m6A methylome of osteosarcoma stem cells enriched by chemotherapy." Epigenomics (2019) Oct. 25.   (# co-corresponding author)

  8. Yuze Guo, Wenjing Huang, Yajing Chen, and Shikui Tu#. "Regularize Network Skip Connections by Gating Mechanisms for Electron Microscopy Image Segmentation." In 2019 IEEE International Conference on Multimedia and Expo (ICME), pp. 868-873. IEEE, 2019.

  9. Wenjing Huang, Shikui Tu, Lei Xu (2019). Revisit Lmser and its further development based on convolutional layers. arXiv:1904.06307 [cs, stat].

  10. Zhiwen Qiang, Hao Chen, Xiaopeng Zhu, Shikui Tu# (2018). HiVis: a portable, scalable tool for hierarchical visualization and analysis of biological networks, Applied Informatics 2018, 5:3

  11. Gen Zhang*, Shikui Tu*, Tianxiong Yu, Xiao-Ou Zhang, Swapnil S. Parhad, Zhiping Weng, William E. Theurkauf (2018). “Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin,” Cell Reports, vol. 24, no. 13, p. 3413–3422.e4, Sep. 2018. (*co-first author)

  12. Gregory M Davis*, Shikui Tu*, Joshua WT Anderson*, Rhys N Colson, Menachem J Gunzburg, Michelle A Francisco, Debashish Ray, Sean P Shrubsole, Julia A Sobotka, Uri Seroussi, Robert X Lao, Tuhin Maity, Monica Z Wu, Katherine McJunkin, Quaid D Morris, Timothy R Hughes, Jacqueline A Wilce, Julie M Claycomb, Zhiping Weng, Peter R Boag (2018). The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in C. elegans. eLife 2018; 7:e35478 DOI: 10.7554/eLife.35478 (*co-first author)

  13. Jin-Xiong Lv, and Shikui Tu#. (2018). Integration of Data-Space and Statistics-Space Boundary-Based Test to Control the False Positive Rate. In International Conference on Intelligent Computing Methodologies, D.-S. Huang, M.M. Gromiha, K. Han, and A. Hussain, eds. (Springer International Publishing), pp. 628–638.

  14. Donglei Zhang*, Shikui Tu*, Michael Stubna, Wei-Sheng Wu, Wei-Che Huang, Zhiping Weng, Heng-Chi Lee. The rules for piRNA targeting reveal resistance of endogenous genes to piRNA silencing in C. elegans. Science, 359, 587-592, 2 February 2018 (*co-first author)

  15. Yajing Chen, Shikui Tu, Yuqi Yi, Lei Xu (2017). Sketch-pix2seq: a Model to Generate Sketches of Multiple Categories. arXiv:1709.04121 [cs].

  16. Weijian Long, Shikui Tu, and Lei Xu, “A Comparative Study on Lagrange Ying-Yang Alternation Method in Gaussian Mixture-Based Clustering,” in Intelligent Data Engineering and Automated Learning – IDEAL 2017, pp. 489–499, 2017

  17. Yajing Chen, Shikui Tu, Lei Xu (2017). The Prognostic Role of Genes with Skewed Expression Distribution in Lung Adenocarcinoma. In: Sun Y., Lu H., Zhang L., Yang J., Huang H. (eds) Intelligence Science and Big Data Engineering (IScIDE 2017). Lecture Notes in Computer Science, vol 10559. Springer, Cham

  18. Yajing Chen, Shikui Tu, Lei Xu (2017). Survival-Expression Map and Essential Forms of Survival-Expression Relations for Genes. In: Sun Y., Lu H., Zhang L., Yang J., Huang H. (eds) Intelligence Science and Big Data Engineering (IScIDE 2017). Lecture Notes in Computer Science, vol 10559. Springer, Cham

  19. Jin-Xiong Lv, Shikui Tu, Lei Xu (2017). A Comparative Study of Joint-SNVs Analysis Methods and Detection of Susceptibility Genes for Gastric Cancer in Korean Population. In: Sun Y., Lu H., Zhang L., Yang J., Huang H. (eds) Intelligence Science and Big Data Engineering (IScIDE 2017). Lecture Notes in Computer Science, vol 10559. Springer, Cham

  20. Swapnil S. Parhad, Shikui Tu, Zhiping Weng, and William E. Theurkauf. (2017). Adaptive Evolution Leads to Cross-Species Incompatibility in the piRNA Transposon Silencing Machinery. Developmental Cell 43, 60–70.e5, October 9, 2017

  21. Wen Zhang, Xiang Yue, Feng Liu, Yanlin Chen, Shikui Tu, and Xining Zhang, “A unified frame of predicting side effects of drugs by using linear neighborhood similarity,” BMC Systems Biology, vol. 11, no. 6, p. 101, Dec. 2017.

  22. Longqiang Luo, Dingfang Li, Wen Zhang, Shikui Tu, Xiaopeng Zhu, Gang Tian. Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features. PLoS ONE 11(4): e0153268, 2016

  23. Wen Tang, Shikui Tu, Heng-Chi Lee, Zhiping Weng, Craig C. Mello. The RNase PARN-1 Trims piRNA 3´ Ends to Promote Transcriptome Surveillance in C. elegans. Cell, 164, 974-984, February 2016

  24. Ming Gao, Travis C Thomson, T Michael Creed, Shikui Tu, Sudan N Loganathan, Christina A Jackson, Patrick McCluskey, Yanyan Lin, Scott E Collier, Zhiping Weng, Paul Lasko, Melanie D Ohi, Alexey L Arkov*. Glycolytic enzymes localize to ribonucleoprotein granules in Drosophila germ cells, bind Tudor and protect from transposable elements. EMBO report, 16 (3), 379-386, 2015

  25. Shikui Tu, Monica Z Wu, Jie Wang, Asher D Cutter, Zhiping Weng, Julie M Claycomb. Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes. Nucleic Acids Research, 43 (1): 208-224, 2014

  26. Zhao Zhang, Jie Wang, Nadine Schultz, Fan Zhang, Swapnil S Parhad, Shikui Tu, Thom Vreven, Phillip D Zamore, Zhiping Weng, William E Theurkauf. The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing. Cell 157(6):1353-1363, 2014

  27. Shikui Tu, and Lei Xu. Learning binary factor analysis with automatic model selection. Neurocomputing 134:149-158, 2014

  28. Lei Shi, Zhi-Yong Liu, Shikui Tu, and Lei Xu. Learning local factor analysis versus mixture of factor analyzers with automatic model selection. Neurocomputing 139:3-14, 2014

  29. Zaihu Pang, Shikui Tu, Xihong Wu, Lei Xu. A comparative study of RPCL and MCE based discriminative training methods for LVCSR. Neurocomputing 134:53-59, 2014

  30. Shikui Tu, Thoru Pederson, and Zhiping Weng. Networking development by Boolean logic. Nucleus 14:4(2), Feb 2013

  31. Zaihu Pang, Shikui Tu, Xihong Wu, Lei Xu. Discriminative GMM-HMM Acoustic Model Selection Using Two-Level Bayesian Ying-Yang Harmony Learning. Lecture Notes in Computer Science 7751: 719-726, 2013

  32. Shikui Tu and Lei Xu, A Theoretical Investigation of Several Model Selection Criteria for Dimensionality Reduction, Pattern Recognition Letters, 33(9): 1117-1126, 2012

  33. Shikui Tu, Runsheng Chen, Runsheng Chen, and Lei Xu. A Non-Gaussian Factor Analysis Approach to Transcription Network Component Analysis, in Proceedings of 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2012), May 9-12, San Diego, California, USA

  34. Shikui Tu, Runsheng Chen, and Lei Xu. Transcription Network Analysis by A Sparse Binary Factor Analysis Algorithm, Journal of Integrative Bioinformatics 9 (2):198, 2012

  35. Shikui Tu, Runsheng Chen and Lei Xu. A binary matrix factorization algorithm for protein complex prediction, Proteome Science 9(Suppl 1):S18, 2011

  36. Shikui Tu and Lei Xu. Parameterizations make different model selections: Empirical findings from factor analysis. Frontiers of Electrical and Electronic Engineering in China 6(2):256-274, 2011

  37. Lei Shi, Shikui Tu and Lei Xu. Learning Gaussian mixture with automatic model selection: A comparative study on three Bayesian related approaches. Frontiers of Electrical and Electronic Engineering in China 6(2):215-244, 2011

  38. Shikui Tu and Lei Xu. An investigation of several typical model selection criteria for detecting the number of signals. Frontiers of Electrical and Electronic Engineering in China 6(2):245-255, 2011

  39. Zaihu Pang, Shikui Tu, Dan Su, Xihong Wu and Lei Xu. Discriminative training of GMM-HMM acoustic model by RPCL learning. Frontiers of Electrical and Electronic Engineering in China 6(2):283-290, 2011

  40. Lei Shi, Shikui Tu and Lei Xu. Gene clustering by structural prior based local factor analysis model under Bayesian Ying-Yang harmony learning. In Proceedings of the BIBM 2010 International on Bioinformatics and Biomedicine, Hong Kong, December 18–21, 2010, pp 696–699

  41. Shikui Tu, Runsheng Chen and Lei Xu. A binary matrix factorization algorithm for protein complex prediction. In Proceedings of the BIBM 2010 International Workshop on Computational Proteomics, Hong Kong, December 18–21, 2010, pp 113–118.

  42. Shikui Tu and Lei Xu. A study of several model selection criteria for determining the number of signals. In Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2010), 14-19 March, 2010, Sheraton Dallas Hotel, Dallas, Texas, USA, pp. 1966-1969

  43. Ke Sun, Shikui Tu, David Yang Gao and Lei Xu. Canonical Dual Approach to Binary Factor Analysis. In Proceedings of the 8th International Conference on Independent Component Analysis and Signal Separation (ICA’09), Lecture Notes in Computer Science 5441 ed. by Adali, T.; Jutten, C.; Romano, J.M.T.; Barros, A.K., Springer-Verlag Berlin, Heidelberg, 2009, pp. 346-353

  44. Shikui Tu and Lei Xu. Theoretical Analysis and Comparison of Several Criteria on Linear Model Dimension Reduction. In Proceedings of the 8th International Conference on Independent Component Analysis and Signal Separation (ICA’09), Lecture Notes in Computer Science 5441 ed. by Adali, T.; Jutten, C.; Romano, J.M.T.; Barros, A.K., Springer-Verlag Berlin, Heidelberg, 2009, pp. 154-162

  45. Shikui Tu, Lei Shi and Lei Xu. A Comparative Study on Data Smoothing Regularization for Local Factor Analysis. Lecture Notes in Computer Science 5163, ed. by Kurková, Véra and Neruda, Roman and Koutník, Jan, Springer Berlin / Heidelberg, 2008, pp. 265-274

bottom of page